openforcefield.topology.TopologyVirtualSite =========================================== .. currentmodule:: openforcefield.topology .. autoclass:: TopologyVirtualSite .. automethod:: __init__ .. rubric:: Methods .. autosummary:: ~TopologyVirtualSite.__init__ ~TopologyVirtualSite.atom ~TopologyVirtualSite.from_bson ~TopologyVirtualSite.from_dict ~TopologyVirtualSite.from_json ~TopologyVirtualSite.from_messagepack ~TopologyVirtualSite.from_pickle ~TopologyVirtualSite.from_toml ~TopologyVirtualSite.from_xml ~TopologyVirtualSite.from_yaml ~TopologyVirtualSite.invalidate_cached_data ~TopologyVirtualSite.to_bson ~TopologyVirtualSite.to_dict ~TopologyVirtualSite.to_json ~TopologyVirtualSite.to_messagepack ~TopologyVirtualSite.to_pickle ~TopologyVirtualSite.to_toml ~TopologyVirtualSite.to_xml ~TopologyVirtualSite.to_yaml .. rubric:: Attributes .. autosummary:: ~TopologyVirtualSite.atoms ~TopologyVirtualSite.molecule ~TopologyVirtualSite.n_particles ~TopologyVirtualSite.particles ~TopologyVirtualSite.topology_molecule ~TopologyVirtualSite.topology_virtual_particle_start_index ~TopologyVirtualSite.topology_virtual_site_index ~TopologyVirtualSite.type ~TopologyVirtualSite.virtual_site