openforcefield.topology.Atom
============================

.. currentmodule:: openforcefield.topology

.. autoclass:: Atom

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~Atom.__init__
      ~Atom.add_bond
      ~Atom.add_virtual_site
      ~Atom.from_bson
      ~Atom.from_dict
      ~Atom.from_json
      ~Atom.from_messagepack
      ~Atom.from_pickle
      ~Atom.from_toml
      ~Atom.from_xml
      ~Atom.from_yaml
      ~Atom.is_bonded_to
      ~Atom.to_bson
      ~Atom.to_dict
      ~Atom.to_json
      ~Atom.to_messagepack
      ~Atom.to_pickle
      ~Atom.to_toml
      ~Atom.to_xml
      ~Atom.to_yaml
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~Atom.atomic_number
      ~Atom.bonded_atoms
      ~Atom.bonds
      ~Atom.element
      ~Atom.formal_charge
      ~Atom.is_aromatic
      ~Atom.is_in_ring
      ~Atom.mass
      ~Atom.molecule
      ~Atom.molecule_atom_index
      ~Atom.molecule_particle_index
      ~Atom.name
      ~Atom.partial_charge
      ~Atom.stereochemistry
      ~Atom.virtual_sites